Package: PvSTATEM 0.1.1

Tymoteusz Kwiecinski

PvSTATEM: Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project of the same name - 'PvSTATEM', which is an international project aiming for malaria elimination.

Authors:Tymoteusz Kwiecinski [aut, cre], Jakub Grzywaczewski [aut], Mateusz Nizwantowski [aut], Przemyslaw Biecek [ths], Nuno Sepulveda [ths]

PvSTATEM_0.1.1.tar.gz
PvSTATEM_0.1.1.zip(r-4.5)PvSTATEM_0.1.1.zip(r-4.4)PvSTATEM_0.1.1.zip(r-4.3)
PvSTATEM_0.1.1.tgz(r-4.4-any)PvSTATEM_0.1.1.tgz(r-4.3-any)
PvSTATEM_0.1.1.tar.gz(r-4.5-noble)PvSTATEM_0.1.1.tar.gz(r-4.4-noble)
PvSTATEM_0.1.1.tgz(r-4.4-emscripten)PvSTATEM_0.1.1.tgz(r-4.3-emscripten)
PvSTATEM.pdf |PvSTATEM.html✨
PvSTATEM/json (API)

# Install 'PvSTATEM' in R:
install.packages('PvSTATEM', repos = c('https://mini-pw.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mini-pw/pvstatem/issues

On CRAN:

5.48 score 2 stars 2 scripts 527 downloads 14 exports 58 dependencies

Last updated 17 days agofrom:ce07d2d6de. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:create_standard_curve_model_analytegenerate_plate_reportget_nmfiis_valid_data_typeis_valid_sample_typePlateBuilderplot_countsplot_layoutplot_mfi_for_analyteplot_standard_curve_analyteplot_standard_curve_analyte_with_modelprocess_plateread_luminex_datatranslate_sample_names_to_sample_types

Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarvergenericsggplot2ggrepelgluegtablehmsisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmenplrpillarpkgconfigpngprettyunitsprogressR.methodsS3R.ooR.utilsR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrsvglitesystemfontstibbletidyselecttimechangetzdbutf8vctrsviridisLitevroomwithr

Basic PvSTATEM functionalities

Tymoteusz Kwieciński

Rendered fromexample_script.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-11-06
Started: 2024-07-08